Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs7900669 chr10:50529000 A/G 4.19E-6 176 25 31.9 13.75 KM Plot
PCPG rs79019500 chr16:71849370 G/A 8.47E-6 178 25 29.43 14.5 KM Plot
PCPG rs7902601 chr10:91311064 A/G 0.000182 170 27.33 24.7 8.67 KM Plot
PCPG rs79036671 chr16:71776707 T/A 1.14E-5 174 24.47 31.48 14.5 KM Plot
PCPG rs7904361 chr10:42641771 T/C 0.000364 173 21.25 25.77 27.27 KM Plot
PCPG rs79052505 chr17:1409859 C/T 1.46E-5 174 25.05 25 25.17 KM Plot
PCPG rs79069498 chr17:1431750 A/G 1.14E-5 178 24.7 26.73 25.17 KM Plot
PCPG rs79074982 chr5:171529422 T/C 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs7908148 chr10:91308497 C/T 0.000182 170 27.33 24.7 8.67 KM Plot
PCPG rs79101914 chr12:56729739 A/G 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs79105936 chr16:86460650 G/T 1.11E-16 173 25.28 30.18 3.17 KM Plot
PCPG rs79114135 chr16:87328210 CTT/C 1.11E-16 171 23.43 30.63 2.22 KM Plot
PCPG rs79115379 chr8:121525124 G/A 4.11E-6 178 27.23 25 19.87 KM Plot
PCPG rs79143504 chr7:1110212 A/G 0.00028 172 25.87 25.4 49.58 KM Plot
PCPG rs7914897 chr10:131966777 T/C 0 178 25.53 24.47 3.17 KM Plot